Introduction
DNAMAN is a sequence analysis software package that provides effective and convenient tools for molecular biologists to deal with frequently used analyses in research.
Features of DNAMAN
- DNA and protein sequence editing
- DNA sequence conversion
- Multiple sequence alignment, alignment editing and analysis
- Phylogenetic tree analysis
- Dot-matrix comparison of DNA or protein sequences
- DNA sequence assembly and editing
- Generating BLAST documents for accessing the BLAST E-mail Server
- Enhanced motif search in sequence and database
- Restriction analysis
- Drawing sequence maps with publication-quality
- Restriction pattern prediction
- Electronic cloning
- Reconstructing restriction maps from restriction fragments
- Silent mutation analysis to create/destroy restriction sites
- Directed mismatch to create/destroy restriction sites
- Translation and codon usage analysis
- Protein hydrophobic/hydrophilic profile analysis
- Protein characterization: sequence composition and prediction of isoelectric point.
- Protein secondary structure prediction
- Reverse translation
- Design of PCR and sequencing primers
- Characterization of thermodynamic properties of DNA or primer sequences
- Mispriming analysis
- Management of oligo, DNA and protein databases
- Generation of random sequences
- Multi-processing to unleash computer power