Sequence SearchSearch for nucleotide sequences |
With DNAMAN, you can search for nucleotide sequences from one or both strands of a DNA sequence. Gaps and ambiguous nucleotides are allowed in the query sequences. You may search for a list of query sequences on the target sequence.
DNAMAN instantly reports the searching results in graphics. Colors and arrowheads indicate different sequence groups and sites. You may magnify any region of the DNA fragment and display the regional sequence of by selection.
With DNAMAN, you can search for DNA or protein consensus sequences from both strands or six reading frames of DNA sequences. DNAMAN provides a database of DNA and protein consensus sequences. The database is expandable and editable. You can create custom consensus sequence databases.
You may search for open reading frames from six reading frames of a DNA sequence. The searching results are shown in a text table. DNAMAN also provides a graphical view of the location of Start/Stop codons on a DNA sequence.
You may search for direct repeat and reverse repeat sequences from both stands of a DNA sequence. You can also search for reverse complementary repeat sequences that may form hairpin/stem-loop structures.
You may search for an amino acid sequence and its variations from the six reading frames of a DNA sequence. DNAMAN allows ambiguous amino acids as well as a number of mismatches in a query sequence.
