DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. DNAMAN can automatically adjust the orientation of each fragment and remove vector sequences as well. You can set sensitivity parameters to control gaps and ambiguous sequences in contigs.
Sequence assembly editor
DNAMAN displays sequence assembly project in three windows:
- Graphic window provides an overview of the assembly
construction. You can edit this graphical presentation to produce high quality diagrams
for publications.
- Name list window contains all assembled sequence names. You can
change the sequence order by moving the sequence names in this window.
- Sequence window shows all original sequences and a consensus
sequence. You can edit any of the original sequences to improve the result of sequence
assembly.
DNAMAN exports sequence the assembly result in a text window. You have options of reporting the consensus sequence only, or all sequences including the consensus sequence and original sequences.