Search for nucleotide sequences

With DNAMAN, you can search for nucleotide sequences from one or both strands of a DNA sequence. Gaps and ambiguous nucleotides are allowed in the query sequences. You can also provide multiple query sequences for searching.

DNAMAN instantly reports the searching results in graphics. Colors and arrowheads indicate different sequence groups and sites. You can magnify any region of the DNA fragment and display the regional sequence of by selection.

The versatility of query sequences and graphical presentations make the search function useful in many other areas, such as presenting restriction sites, elements and gene structures.

Search for consensus sequences

With DNAMAN, you can search for DNA or protein consensus sequences from both strands or six reading frames of DNA sequences. DNAMAN provides a database of DNA and protein consensus sequences. The database is expandable and editable. You can create custom consensus sequence databases.

Search for open reading frames

You can search for open reading frames from six reading frames of a DNA sequence. The searching result is shown in a text table. DNAMAN can also display the result in a graphic window.

Search for repeat sequences

You can search for direct repeat and reverse repeat sequences from both stands of a DNA sequence. You can also search for reverse complementary repeat sequences that may form hairpin/stem-loop structures.

Search for amino acid sequences

You can search for an amino acid sequence and its variations from the six reading frames of a DNA sequence. DNAMAN allows ambiguous amino acids as well as a number of mismatches in a query sequence.