Oligo database

You may have a large number of oligo nucleotides for experiments of sequencing, blotting, PCR, etc....DNAMAN provides an oligo database manager that can help you to effectively organize and use these oligoes.

When you create oligo databases for different projects. DNAMAN allows you to attach a password for the security of the database.

• Any oligo database is expandable and all records are editable.
• You can provide information for each record in seven fields: name, source, memo, length, GC content, melting temperature and sequence.
• The name, source, memo, length can be used as sorting keys.
• You can import a large number of oligo records from a text file, or export any record to a text file.

DNA and protein database

DNAMAN database manager is used to collect and store DNA and protein sequences. You can create or delete a DNA or protein database and set security to protect the database.

DNAMAN has an easy-to-use database manager. All databases are expandable and all records are editable. You can directly import records from text files, GCG and GenBank files. The information related to any record is shown in seven fields: sequence name, definition, keywords, source, reference, memo, coding region. The first four fields can be used as sorting keys.

Searching in DNA or protein database

• DNAMAN can search for homology sequences of a target DNA by scanning all records in a DNA database. The algorithm for the comparison is fast alignment method.
• DNAMAN searches for a nucleotide sequence from both strands of all records in a DNA database.
• DNAMAN searches for a peptide sequence from all records of a protein database as well as the six reading frames of all records in a DNA database.